PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475716
Common NameARALYDRAFT_475716
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 257aa    MW: 27849 Da    PI: 6.0227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475716genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000282104123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++C + F ++  L  H++ H
   475716  82 FSCNYCQRKFYSSQALGGHQNAH 104
              89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-678109No hitNo description
PROSITE profilePS5015711.42782109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRPILDLEVE ASSDSSSSQV ASNLSPVGED YKPILLNLSL SFNNNNLDLE SSSLTLPLSS  60
TSESSNPEQQ QQQQPSVSKR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRAMRMGLA  120
GVFPGRGSSS SYAAATAAAL SCLPLHGSGN GNMTSFRTLG IRAHASSHDV GMTRQTPETI  180
IRNIARFNQG YFGNCIPFYV EDDEAEMLWP GSFRQATDAA AVEAGNDNLG ERKMDFLDVK  240
QAVDMESSLP DLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0264800.0AC026480.6 Arabidopsis thaliana chromosome 1 BAC F15E12 genomic sequence, complete sequence.
GenBankAF3616300.0AF361630.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankAK2302290.0AK230229.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-05-K17.
GenBankAK2302320.0AK230232.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-06-L22.
GenBankAK2302500.0AK230250.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-17-O17.
GenBankAY0560670.0AY056067.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankAY0580870.0AY058087.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888482.10.0hypothetical protein ARALYDRAFT_475716
SwissprotQ392631e-145ZFP4_ARATH; Zinc finger protein 4
TrEMBLD7KT530.0D7KT53_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.2__846__AT1G66140.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-118zinc finger protein 4